Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0801624.10b.11a.10a with 111 members (Importin N-terminal domain-containing protein)

Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia / Chordata /

... /

Vertebrata / Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda /

Amniota /

Completeness score: 0.97

‹

Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

71.2%

This HOG has 2530 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0801782	Eukaryota	1036		55.3%	2
HOG:E0801994	Eukaryota	879		52.1%	2
HOG:E0802420	Eukaryota	860		75.2%	2
HOG:E0802172	Eukaryota	789		23.1%	2
HOG:E0802339	Eukaryota	784		88.8%	2
HOG:E0802685	Eukaryota	751		74.4%	2
HOG:E0801618	Eukaryota	633		76.6%	2
HOG:E0801622	Eukaryota	556		81.8%	2
HOG:E0793270	Opisthokonta	485		42.9%	2
HOG:E0793046	Opisthokonta	484		87.6%	2
HOG:E0814712	Eukaryota	452		37.6%	2
HOG:E0804350	Eukaryota	416		84.4%	2
HOG:E0804672	Eukaryota	413		78.7%	2
HOG:E0811227	Eukaryota	406		93.8%	2
HOG:E0812763	Eukaryota	374		82.1%	2
HOG:E0811529	Eukaryota	366		73.8%	2
HOG:E0793127	Opisthokonta	360		94.2%	2
HOG:E0807502	Eukaryota	359		77.4%	2
HOG:E0802722	Eukaryota	325		52.9%	2
HOG:E0314103	Embryophyta	291		90.4%	2
HOG:E0806599	Eukaryota	287		79.4%	2
HOG:E0777886	Eumetazoa	283		22.6%	2
HOG:E0814663	Eukaryota	283		61.5%	2
HOG:E0794714	Opisthokonta	228		87.7%	2
HOG:E0803777	Eukaryota	228		86.8%	2

Showing 1 to 25 of 2529 rows rows per page